SLC16A10 protein (Felis catus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SLC16A10

Solute carrier family 16 member 10. (611 aa)

Predicted Functional Partners:

SLC16A2

0.902

GTF3C5

0.681

GTF3C3

0.676

SLCO1C1

0.648

SLC5A5

0.571

GTF3C2

0.554

BRF1

0.550

BDP1

0.542

GTF3C1

0.540

GTF3C4

0.540

Your Current Organism:

Felis catus

NCBI taxonomy Id: 9685
Other names: F. catus, Felis domesticus, Felis silvestris catus, Korat cats, cat, cats, domestic cat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDP1	BRF1	ENSFCAP00000056619	ENSFCAP00000042333	SANT domain-containing protein.	BRF1 RNA polymerase III transcription initiation factor subunit.	0.998
BDP1	GTF3C1	ENSFCAP00000056619	ENSFCAP00000009211	SANT domain-containing protein.	General transcription factor IIIC subunit 1.	0.882
BDP1	GTF3C2	ENSFCAP00000056619	ENSFCAP00000014056	SANT domain-containing protein.	General transcription factor IIIC subunit 2.	0.815
BDP1	GTF3C3	ENSFCAP00000056619	ENSFCAP00000036018	SANT domain-containing protein.	General transcription factor IIIC subunit 3.	0.952
BDP1	GTF3C4	ENSFCAP00000056619	ENSFCAP00000025535	SANT domain-containing protein.	General transcription factor IIIC subunit 4.	0.804
BDP1	GTF3C5	ENSFCAP00000056619	ENSFCAP00000006600	SANT domain-containing protein.	General transcription factor IIIC subunit 5.	0.889
BDP1	SLC16A10	ENSFCAP00000056619	ENSFCAP00000056249	SANT domain-containing protein.	Solute carrier family 16 member 10.	0.542
BRF1	BDP1	ENSFCAP00000042333	ENSFCAP00000056619	BRF1 RNA polymerase III transcription initiation factor subunit.	SANT domain-containing protein.	0.998
BRF1	GTF3C1	ENSFCAP00000042333	ENSFCAP00000009211	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 1.	0.882
BRF1	GTF3C2	ENSFCAP00000042333	ENSFCAP00000014056	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 2.	0.783
BRF1	GTF3C3	ENSFCAP00000042333	ENSFCAP00000036018	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 3.	0.993
BRF1	GTF3C4	ENSFCAP00000042333	ENSFCAP00000025535	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 4.	0.855
BRF1	GTF3C5	ENSFCAP00000042333	ENSFCAP00000006600	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 5.	0.868
BRF1	SLC16A10	ENSFCAP00000042333	ENSFCAP00000056249	BRF1 RNA polymerase III transcription initiation factor subunit.	Solute carrier family 16 member 10.	0.550
GTF3C1	BDP1	ENSFCAP00000009211	ENSFCAP00000056619	General transcription factor IIIC subunit 1.	SANT domain-containing protein.	0.882
GTF3C1	BRF1	ENSFCAP00000009211	ENSFCAP00000042333	General transcription factor IIIC subunit 1.	BRF1 RNA polymerase III transcription initiation factor subunit.	0.882
GTF3C1	GTF3C2	ENSFCAP00000009211	ENSFCAP00000014056	General transcription factor IIIC subunit 1.	General transcription factor IIIC subunit 2.	0.989
GTF3C1	GTF3C3	ENSFCAP00000009211	ENSFCAP00000036018	General transcription factor IIIC subunit 1.	General transcription factor IIIC subunit 3.	0.989
GTF3C1	GTF3C4	ENSFCAP00000009211	ENSFCAP00000025535	General transcription factor IIIC subunit 1.	General transcription factor IIIC subunit 4.	0.986
GTF3C1	GTF3C5	ENSFCAP00000009211	ENSFCAP00000006600	General transcription factor IIIC subunit 1.	General transcription factor IIIC subunit 5.	0.970