ABCA3 protein (Odobenus rosmarus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABCA3

ATP-binding cassette sub-family A member 3. (1704 aa)

Predicted Functional Partners:

SFTPB

0.702

SFTPC

0.692

LPCAT1

0.642

PCYT1A

0.528

PROSER3

0.524

IQCC

0.522

LOC101382334

0.499

PELI3

0.469

CPAMD8

0.468

HOPX

0.459

Your Current Organism:

Odobenus rosmarus

NCBI taxonomy Id: 9708
Other names: O. rosmarus divergens, Odobenus rosmarus divergens, Pacific walrus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCA3	CPAMD8	A0A2U3W578	A0A2U3ZJW7	ATP-binding cassette sub-family A member 3.	C3 and PZP-like alpha-2-macroglobulin domain-containing protein 8.	0.468
ABCA3	HOPX	A0A2U3W578	A0A2U3VJF6	ATP-binding cassette sub-family A member 3.	Homeodomain-only protein.	0.459
ABCA3	IQCC	A0A2U3W578	A0A2U3WD81	ATP-binding cassette sub-family A member 3.	LOW QUALITY PROTEIN: IQ domain-containing protein C.	0.522
ABCA3	LOC101382334	A0A2U3W578	A0A2U3ZIP5	ATP-binding cassette sub-family A member 3.	Pulmonary surfactant-associated protein A isoform X1.	0.499
ABCA3	LPCAT1	A0A2U3W578	A0A2U3WR29	ATP-binding cassette sub-family A member 3.	Lysophosphatidylcholine acyltransferase 1.	0.642
ABCA3	PCYT1A	A0A2U3W578	A0A2U3VC62	ATP-binding cassette sub-family A member 3.	Choline-phosphate cytidylyltransferase A.	0.528
ABCA3	PELI3	A0A2U3W578	A0A2U3VH25	ATP-binding cassette sub-family A member 3.	E3 ubiquitin-protein ligase pellino homolog; E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins.	0.469
ABCA3	PROSER3	A0A2U3W578	A0A2U3ZBS2	ATP-binding cassette sub-family A member 3.	Proline and serine-rich protein 3.	0.524
ABCA3	SFTPB	A0A2U3W578	A0A2U3X0N9	ATP-binding cassette sub-family A member 3.	Pulmonary surfactant-associated protein B.	0.702
ABCA3	SFTPC	A0A2U3W578	A0A2U3W2Q0	ATP-binding cassette sub-family A member 3.	Pulmonary surfactant-associated protein C isoform X1.	0.692
CPAMD8	ABCA3	A0A2U3ZJW7	A0A2U3W578	C3 and PZP-like alpha-2-macroglobulin domain-containing protein 8.	ATP-binding cassette sub-family A member 3.	0.468
CPAMD8	IQCC	A0A2U3ZJW7	A0A2U3WD81	C3 and PZP-like alpha-2-macroglobulin domain-containing protein 8.	LOW QUALITY PROTEIN: IQ domain-containing protein C.	0.640
CPAMD8	PELI3	A0A2U3ZJW7	A0A2U3VH25	C3 and PZP-like alpha-2-macroglobulin domain-containing protein 8.	E3 ubiquitin-protein ligase pellino homolog; E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins.	0.634
CPAMD8	PROSER3	A0A2U3ZJW7	A0A2U3ZBS2	C3 and PZP-like alpha-2-macroglobulin domain-containing protein 8.	Proline and serine-rich protein 3.	0.640
HOPX	ABCA3	A0A2U3VJF6	A0A2U3W578	Homeodomain-only protein.	ATP-binding cassette sub-family A member 3.	0.459
HOPX	LOC101382334	A0A2U3VJF6	A0A2U3ZIP5	Homeodomain-only protein.	Pulmonary surfactant-associated protein A isoform X1.	0.521
HOPX	SFTPB	A0A2U3VJF6	A0A2U3X0N9	Homeodomain-only protein.	Pulmonary surfactant-associated protein B.	0.522
HOPX	SFTPC	A0A2U3VJF6	A0A2U3W2Q0	Homeodomain-only protein.	Pulmonary surfactant-associated protein C isoform X1.	0.770
IQCC	ABCA3	A0A2U3WD81	A0A2U3W578	LOW QUALITY PROTEIN: IQ domain-containing protein C.	ATP-binding cassette sub-family A member 3.	0.522
IQCC	CPAMD8	A0A2U3WD81	A0A2U3ZJW7	LOW QUALITY PROTEIN: IQ domain-containing protein C.	C3 and PZP-like alpha-2-macroglobulin domain-containing protein 8.	0.640