STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102731085RBR-type E3 ubiquitin transferase. (856 aa)    
Predicted Functional Partners:
RBX1
E3 ubiquitin-protein ligase RBX1 isoform X3.
    
 0.881
UBA52
ubiquitin-60S ribosomal protein L40 isoform X3.
    
  0.874
UBE2L6
ubiquitin/ISG15-conjugating enzyme E2 L6; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.830
LOC102728823
Ubiquitin-conjugating enzyme E2 L3-like isoform X1.
   
 0.830
UBE2L3
Ubiquitin-conjugating enzyme E2 L3; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.830
LOC102728200
ubiquitin-40S ribosomal protein S27a-like.
    
 0.761
LOC102747337
ubiquitin-40S ribosomal protein S27a-like.
    
 0.761
LOC102746862
ubiquitin-40S ribosomal protein S27a-like isoform X1.
    
 0.761
CUL1
Cullin-1; Belongs to the cullin family.
   
 0.750
LOC102750322
polyubiquitin-B-like.
    
 0.741
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.