STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102750303Collagen alpha-1(I) chain-like. (395 aa)    
Predicted Functional Partners:
COL1A2
Collagen alpha-2(I) chain.
  
0.998
COL6A1
Collagen alpha-1(VI) chain.
  
0.979
COL6A2
Collagen alpha-2(VI) chain.
  
0.967
LOC102750213
Collagen alpha-1(XXVII) chain-like.
 
  
0.926
SPARC
SPARC isoform X2.
   
 
 0.917
ITGB3
Integrin beta; Belongs to the integrin beta chain family.
    
 0.889
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.872
ITGA5
Integrin alpha-5; Belongs to the integrin alpha chain family.
    
 0.843
ITGA10
LOW QUALITY PROTEIN: integrin alpha-10; Belongs to the integrin alpha chain family.
    
 0.822
LOC102727373
Integrin alpha-10-like.
    
 0.822
Your Current Organism:
Leptonychotes weddellii
NCBI taxonomy Id: 9713
Other names: L. weddellii, Leptonychotes weddelli, Weddell seal
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.