STRINGSTRING
VIM protein (Tursiops truncatus) - STRING interaction network
"VIM" - Vimentin in Tursiops truncatus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VIMVimentin (466 aa)    
Predicted Functional Partners:
ENSTTRG00000004152
MHC class II antigen (255 aa)
       
      0.760
HLA-DRA
Major histocompatibility complex, class II, DR alpha (252 aa)
       
      0.760
ENSTTRG00000012848
Transforming growth factor beta (338 aa)
       
 
  0.736
SPTAN1
Spectrin, alpha, non-erythrocytic 1 (2431 aa)
     
  0.690
CDH1
Cadherin 1, type 1, E-cadherin (epithelial) (882 aa)
       
 
  0.627
MYL1
Myosin, light chain 1, alkali; skeletal, fast (194 aa)
     
  0.619
FGF2
Fibroblast growth factor 2 (basic) (287 aa)
           
  0.617
EGF
Epidermal growth factor (1205 aa)
           
  0.612
NEB
Nebulin (6623 aa)
     
  0.604
TP53
Tumor protein p53 (387 aa)
           
  0.603
Your Current Organism:
Tursiops truncatus
NCBI taxonomy Id: 9739
Other names: Atlantic bottle-nosed dolphin, Cetacea, Delphinidae, Odontoceti, T. truncatus, Tursiops, Tursiops truncatus, bottle-nosed dolphin, bottlenosed dolphin, dolphins, marine dolphins, tooth whales, whale, whales, whales & dolphins, whales, dolphins, and porpoises
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