Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEL92239.1 | SEM08013.1 | SAMN05444853_101169 | SAMN05444853_104112 | Small subunit ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Chorismate mutase. | 0.484 |
SEL92239.1 | SEM29944.1 | SAMN05444853_101169 | SAMN05444853_11176 | Small subunit ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Chorismate mutase. | 0.484 |
SEL92239.1 | cmk | SAMN05444853_101169 | SAMN05444853_101168 | Small subunit ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Cytidylate kinase. | 0.849 |
SEL92239.1 | ihfB | SAMN05444853_101169 | SAMN05444853_101170 | Small subunit ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Integration host factor subunit beta; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.722 |
SEL92239.1 | lapA | SAMN05444853_101169 | SAMN05444853_101171 | Small subunit ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Putative membrane protein; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family. | 0.523 |
SEL92239.1 | lapB | SAMN05444853_101169 | SAMN05444853_101172 | Small subunit ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Lipopolysaccharide assembly protein B; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane; Belongs to the LapB family. | 0.580 |
SEM08013.1 | SEL92239.1 | SAMN05444853_104112 | SAMN05444853_101169 | Chorismate mutase. | Small subunit ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.484 |
SEM08013.1 | SEM29944.1 | SAMN05444853_104112 | SAMN05444853_11176 | Chorismate mutase. | Chorismate mutase. | 0.989 |
SEM08013.1 | cmk | SAMN05444853_104112 | SAMN05444853_101168 | Chorismate mutase. | Cytidylate kinase. | 0.524 |
SEM08013.1 | gyrA | SAMN05444853_104112 | SAMN05444853_10450 | Chorismate mutase. | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.476 |
SEM08013.1 | ihfA | SAMN05444853_104112 | SAMN05444853_101156 | Chorismate mutase. | Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.458 |
SEM08013.1 | ihfB | SAMN05444853_104112 | SAMN05444853_101170 | Chorismate mutase. | Integration host factor subunit beta; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.458 |
SEM29944.1 | SEL92239.1 | SAMN05444853_11176 | SAMN05444853_101169 | Chorismate mutase. | Small subunit ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.484 |
SEM29944.1 | SEM08013.1 | SAMN05444853_11176 | SAMN05444853_104112 | Chorismate mutase. | Chorismate mutase. | 0.989 |
SEM29944.1 | cmk | SAMN05444853_11176 | SAMN05444853_101168 | Chorismate mutase. | Cytidylate kinase. | 0.494 |
SEM29944.1 | gyrA | SAMN05444853_11176 | SAMN05444853_10450 | Chorismate mutase. | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.532 |
SEM29944.1 | ihfA | SAMN05444853_11176 | SAMN05444853_101156 | Chorismate mutase. | Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.456 |
SEM29944.1 | ihfB | SAMN05444853_11176 | SAMN05444853_101170 | Chorismate mutase. | Integration host factor subunit beta; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.456 |
SEM29944.1 | lapA | SAMN05444853_11176 | SAMN05444853_101171 | Chorismate mutase. | Putative membrane protein; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family. | 0.524 |
cas1 | ihfA | SAMN05444853_10714 | SAMN05444853_101156 | CRISP-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. | Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.616 |
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