Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SEM02230.1 | SEM02256.1 | SAMN05444853_10379 | SAMN05444853_10380 | Cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family. | DNA-binding protein HU-alpha; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.488 |
| SEM02230.1 | SEM02307.1 | SAMN05444853_10379 | SAMN05444853_10382 | Cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family. | Thioredoxin reductase (NADPH). | 0.466 |
| SEM02256.1 | SEM02230.1 | SAMN05444853_10380 | SAMN05444853_10379 | DNA-binding protein HU-alpha; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family. | 0.488 |
| SEM02256.1 | SEM02279.1 | SAMN05444853_10380 | SAMN05444853_10381 | DNA-binding protein HU-alpha; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Hypothetical protein. | 0.522 |
| SEM02256.1 | SEM02307.1 | SAMN05444853_10380 | SAMN05444853_10382 | DNA-binding protein HU-alpha; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Thioredoxin reductase (NADPH). | 0.444 |
| SEM02256.1 | SEM08013.1 | SAMN05444853_10380 | SAMN05444853_104112 | DNA-binding protein HU-alpha; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Chorismate mutase. | 0.458 |
| SEM02256.1 | SEM29944.1 | SAMN05444853_10380 | SAMN05444853_11176 | DNA-binding protein HU-alpha; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Chorismate mutase. | 0.456 |
| SEM02256.1 | dnaA | SAMN05444853_10380 | SAMN05444853_11421 | DNA-binding protein HU-alpha; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Chromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.557 |
| SEM02256.1 | ihfA | SAMN05444853_10380 | SAMN05444853_101156 | DNA-binding protein HU-alpha; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.633 |
| SEM02256.1 | polA | SAMN05444853_10380 | SAMN05444853_1326 | DNA-binding protein HU-alpha; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.405 |
| SEM02256.1 | rpsT | SAMN05444853_10380 | SAMN05444853_102114 | DNA-binding protein HU-alpha; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Small subunit ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.417 |
| SEM02256.1 | topA | SAMN05444853_10380 | SAMN05444853_12723 | DNA-binding protein HU-alpha; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.435 |
| SEM02279.1 | SEM02256.1 | SAMN05444853_10381 | SAMN05444853_10380 | Hypothetical protein. | DNA-binding protein HU-alpha; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.522 |
| SEM02279.1 | SEM02307.1 | SAMN05444853_10381 | SAMN05444853_10382 | Hypothetical protein. | Thioredoxin reductase (NADPH). | 0.693 |
| SEM02307.1 | SEM02230.1 | SAMN05444853_10382 | SAMN05444853_10379 | Thioredoxin reductase (NADPH). | Cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family. | 0.466 |
| SEM02307.1 | SEM02256.1 | SAMN05444853_10382 | SAMN05444853_10380 | Thioredoxin reductase (NADPH). | DNA-binding protein HU-alpha; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.444 |
| SEM02307.1 | SEM02279.1 | SAMN05444853_10382 | SAMN05444853_10381 | Thioredoxin reductase (NADPH). | Hypothetical protein. | 0.693 |
| SEM08013.1 | SEM02256.1 | SAMN05444853_104112 | SAMN05444853_10380 | Chorismate mutase. | DNA-binding protein HU-alpha; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.458 |
| SEM08013.1 | SEM29944.1 | SAMN05444853_104112 | SAMN05444853_11176 | Chorismate mutase. | Chorismate mutase. | 0.989 |
| SEM08013.1 | ihfA | SAMN05444853_104112 | SAMN05444853_101156 | Chorismate mutase. | Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. | 0.458 |
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