STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM40755.1Hypothetical protein. (311 aa)    
Predicted Functional Partners:
SEM40523.1
Hypothetical protein.
 
     0.782
SEM28423.1
Helix-turn-helix domain-containing protein.
  
     0.661
SEM10490.1
Ecotin.
  
     0.623
SEM40781.1
Winged helix-turn-helix DNA-binding.
       0.618
SEM40739.1
Hypothetical protein.
       0.584
SEM28398.1
Uncharacterized conserved protein PhnB, glyoxalase superfamily.
  
     0.575
SEM40718.1
Hypothetical protein.
       0.536
SEM46067.1
4-amino-4-deoxychorismate lyase.
  
     0.419
tadA
tRNA(adenine34) deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
       0.418
SEM40832.1
Hypothetical protein.
       0.418
Your Current Organism:
Pasteurella skyensis
NCBI taxonomy Id: 97481
Other names: DSM 24204, NCIMB 13593, NCTC 13204, P. skyensis, Pasteurella skyensis Birkbeck et al. 2002, strain 95A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.