STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pseGUnannotated protein. (519 aa)    
Predicted Functional Partners:
kdsB_2
Unannotated protein.
  
 0.984
pseI
Unannotated protein.
 
 
 0.965
arnB_2
Unannotated protein; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.929
rmlA
Unannotated protein; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
    0.673
MFFC18_22180
Unannotated protein.
  
  
 0.582
rnc
Unannotated protein; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.571
capD
Unannotated protein.
 
   
 0.532
lgrD_1
Unannotated protein.
  
  
 0.524
rffG_1
Unannotated protein; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
    0.516
arnB_1
Unannotated protein; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.507
Your Current Organism:
Mariniblastus fucicola
NCBI taxonomy Id: 980251
Other names: DSM 26290, LMG 29748, LMG:29748, M. fucicola, Mariniblastus fucicola Lage et al. 2017, Planctomyces sp. FC18, Planctomycetaceae bacterium FC18, strain FC18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.