STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylR_2Unannotated protein. (384 aa)    
Predicted Functional Partners:
araC
Unannotated protein.
 
 
 0.795
gltB_2
Unannotated protein.
   
 
 0.771
rpoA_2
Unannotated protein.
   
 
 0.751
crh
Unannotated protein.
   
 
 0.742
adaA_2
Unannotated protein.
  
    0.725
rpoA_1
Unannotated protein.
   
 
 0.719
rpoA_3
Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.719
rpoB
Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.694
gfo_3
Unannotated protein.
 
     0.595
MFFC18_33600
Unannotated protein.
  
 
 
 0.583
Your Current Organism:
Mariniblastus fucicola
NCBI taxonomy Id: 980251
Other names: DSM 26290, LMG 29748, LMG:29748, M. fucicola, Mariniblastus fucicola Lage et al. 2017, Planctomyces sp. FC18, Planctomycetaceae bacterium FC18, strain FC18
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.