STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L484_007495Myb domain-containing protein. (791 aa)    
Predicted Functional Partners:
L484_003662
Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein.
    
  0.873
L484_016008
Uncharacterized protein.
    
 0.809
L484_005122
Putative DNA-directed RNA polymerase I subunit RPA43.
    
 0.806
L484_013944
Pentatricopeptide repeat-containing protein.
   
 
  0.780
L484_013464
DNA-directed RNA polymerase I subunit rpa49.
    
 0.779
L484_023715
DNA-directed RNA polymerases I and III subunit RPAC1.
    
  0.765
L484_008782
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.743
L484_011395
Transcription initiation factor TFIID subunit 1-A.
    
 0.741
L484_005070
TATA-box-binding protein.
   
 
 0.720
L484_005022
TATA-box-binding protein.
   
 
 0.720
Your Current Organism:
Morus notabilis
NCBI taxonomy Id: 981085
Other names: M. notabilis, Morus notabilis C.K.Schneid.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.