STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEP12175.1Serine phosphatase RsbU, regulator of sigma subunit. (591 aa)    
Predicted Functional Partners:
AEP13730.1
Signal transduction histidine kinase.
 
 0.940
AEP11585.1
Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.934
AEP11573.1
Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.927
AEP11574.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
 
 
 0.919
AEP11326.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
 
 
 0.918
AEP12596.1
Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.914
AEP13534.1
Type III secretion system apparatus protein YscQ/HrcQ.
  
 
 0.826
AEP12581.1
Anti-anti-sigma factor.
 
 
 0.811
AEP12582.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
 
 
 0.783
AEP13395.1
Type III secretory pathway, lipoprotein EscJ.
  
  
 0.782
Your Current Organism:
Chloracidobacterium thermophilum
NCBI taxonomy Id: 981222
Other names: C. thermophilum B, Candidatus Chloracidobacterium thermophilum B, Chloracidobacterium thermophilum B, Chloracidobacterium thermophilum str. B, Chloracidobacterium thermophilum strain B
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