STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL17A1Collagen type XVII alpha 1 chain. (1506 aa)    
Predicted Functional Partners:
PLEC
Plectin.
   
 0.927
LAMA3
Laminin subunit alpha 3.
   
 0.824
ITGB4
Integrin beta.
   
 0.824
CD151
Tetraspanin.
   
 
 0.821
ITGA6
Integrin subunit alpha 6; Belongs to the integrin alpha chain family.
   
 0.788
COL21A1
Collagen type XXI alpha 1 chain.
  
 
0.742
PLOD2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.
   
 0.722
COLGALT1
Glycosyltransferase 25 domain containing 1.
    
 0.698
COL27A1
Collagen type XXVII alpha 1 chain.
  
  
0.677
PLOD3
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3.
   
 0.667
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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