STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAPT1Transmembrane anterior posterior transformation 1. (779 aa)    
Predicted Functional Partners:
ZFYVE1
Zinc finger FYVE-type containing 1.
   
    0.790
SPP2
Secreted phosphoprotein 24; Could coordinate an aspect of bone turnover; Belongs to the SPP2 family.
   
  
 0.781
NSUN7
NOP2/Sun RNA methyltransferase family member 7; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
      
 0.756
CSTF1
Cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa.
 
      0.735
LAP3
Cytosol aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides; Belongs to the peptidase M17 family.
      
 0.689
SUCO
SUN domain containing ossification factor.
    
   0.651
NKIRAS2
NF-kappa-B inhibitor-interacting Ras-like protein 2 isoform a.
      
 0.647
LDB2
LIM domain binding 2.
      
 0.640
POLR3D
RNA polymerase III subunit D.
      
 0.608
ARL2BP
ADP ribosylation factor like GTPase 2 binding protein.
      
 0.602
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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