STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DCAF17DDB1 and CUL4 associated factor 17. (490 aa)    
Predicted Functional Partners:
DDA1
DET1 and DDB1 associated 1.
    
 0.781
VPS13A
Vacuolar protein sorting 13 homolog A.
      
 0.772
SPTLC2
Serine palmitoyltransferase long chain base subunit 2.
      
 0.732
CUL4B
Cullin 4B; Belongs to the cullin family.
   
 0.703
CUL4A
Cullin 4A; Belongs to the cullin family.
   
 0.690
GLDC
Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.
      
 0.688
PIK3C2G
Phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma; Belongs to the PI3/PI4-kinase family.
      
 0.679
REPS1
RALBP1 associated Eps domain containing 1.
   
  
 0.669
AP4M1
AP-4 complex subunit mu-1; Component of the adaptor protein complex 4 (AP-4). Adaptor protein complexes are vesicle coat components involved both in vesicle formation and cargo selection. They control the vesicular transport of proteins in different trafficking pathways. AP-4 forms a non clathrin- associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system. It is also involved in protein sorting to the basolateral membrane in epithelial cells and the proper asym [...]
      
 0.654
GTPBP2
GTP binding protein 2.
      
 0.653
Your Current Organism:
Sus scrofa
NCBI taxonomy Id: 9823
Other names: S. scrofa, pig, pigs, swine, wild boar
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