STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AG1IA_09356Polysaccharide lyase family 1 protein. (307 aa)    
Predicted Functional Partners:
AG1IA_05447
Polysaccharide lyase family 3 protein.
  
  
 0.850
AG1IA_02234
Polygalacturonase.
     
 0.808
AG1IA_07627
Zf-rbx1 domain-containing protein.
    
 0.802
AG1IA_08791
Skp1 domain-containing protein; Belongs to the SKP1 family.
   
 0.795
AG1IA_06514
Skp1 domain-containing protein; Belongs to the SKP1 family.
   
 0.795
AG1IA_00930
S-phase kinase-associated protein 1A-like protein; Belongs to the SKP1 family.
   
 0.795
AG1IA_09078
Skp1 family, tetramerisation domain-containing protein; Belongs to the SKP1 family.
    
 0.769
AG1IA_05204
Ubiquitin ligase SCF complex subunit Cullin; Belongs to the cullin family.
    
 0.758
AG1IA_02470
Uncharacterized protein.
    
 0.758
AG1IA_01521
Cullin-1; Belongs to the cullin family.
    
 0.758
Your Current Organism:
Rhizoctonia solani AG1IA
NCBI taxonomy Id: 983506
Other names: R. solani AG-1 IA, Rhizoctonia solani AG-1 IA, Rhizoctonia solani AG-1IA, Rhizoctonia solani AG-1IA SC, Rhizoctonia solani AG1 IA, Rhizoctonia solani AG1 IA SC, Rhizoctonia solani AG1-IA
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