STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AG1IA_00921Small nuclear ribonucleoprotein. (232 aa)    
Predicted Functional Partners:
AG1IA_00716
RNA recognition motif domain-containing protein.
   
 0.996
AG1IA_08561
U1 snRNP 70K protein.
   
 
 0.987
AG1IA_04039
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 
 0.974
AG1IA_10154
Zf-U1 domain-containing protein.
    
 0.970
AG1IA_01456
Small nuclear ribonucleoprotein polypeptide A.
    
 0.966
AG1IA_01753
RNA recognition motif domain-containing protein.
    
 
 0.963
AG1IA_01379
Nuclear cap-binding protein subunit 2.
    
 
 0.963
AG1IA_08662
SART-1 domain-containing protein.
    
 0.941
AG1IA_03719
Splicing factor 3B subunit 3.
    
 0.936
AG1IA_02073
Pre-mRNA-splicing ATP-dependent RNA helicase PRP28; Belongs to the DEAD box helicase family.
   
 0.935
Your Current Organism:
Rhizoctonia solani AG1IA
NCBI taxonomy Id: 983506
Other names: R. solani AG-1 IA, Rhizoctonia solani AG-1 IA, Rhizoctonia solani AG-1IA, Rhizoctonia solani AG-1IA SC, Rhizoctonia solani AG1 IA, Rhizoctonia solani AG1 IA SC, Rhizoctonia solani AG1-IA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.