STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lacal_2259KEGG: fjo:Fjoh_3261 hypothetical protein (132 aa)    
Predicted Functional Partners:
Lacal_2258
KEGG: cpi:Cpin_6416 rhs element Vgr protein; TIGRFAM: Rhs element Vgr protein; PFAM: Rhs element Vgr protein
 
     0.953
Lacal_2254
TIGRFAM: RHS repeat-associated core domain; YD repeat; KEGG: bfr:BF2847 putative rhs protein
 
     0.878
Lacal_2261
KEGG: cao:Celal_3745 hypothetical protein
 
     0.856
Lacal_2243
KEGG: fjo:Fjoh_3266 hypothetical protein
 
     0.792
Lacal_2256
annotation not available
       0.792
Lacal_2257
KEGG: bfr:BF2846 hypothetical protein
       0.792
Lacal_2242
KEGG: fjo:Fjoh_3267 hypothetical protein
 
     0.790
Lacal_2270
KEGG: cao:Celal_3988 rhs element vgr protein; TIGRFAM: Rhs element Vgr protein; PFAM: Rhs element Vgr protein
 
     0.786
Lacal_2272
KEGG: fjo:Fjoh_3278 hypothetical protein
  
     0.784
Lacal_2274
KEGG: fjo:Fjoh_3263 gpW/GP25 family protein
  
     0.784
Your Current Organism:
Lacinutrix sp. 5H374
NCBI taxonomy Id: 983544
Other names: L. sp. 5H-3-7-4, Lacinutrix sp. 5H-3-7-4, Lacinutrix sp. 5H374
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