STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH02441.1PFAM: ATP dependent DNA ligase, central; ATP dependent DNA ligase, C-terminal; KEGG: fba:FIC_01805 DNA ligase. (529 aa)    
Predicted Functional Partners:
AEH02442.1
KEGG: fba:FIC_01806 mRNA 3'-end processing factor.
 0.997
AEH02440.1
DEAD/H associated domain protein; KEGG: psn:Pedsa_1472 ATP dependent helicase, Lhr family; PFAM: DEAD/H associated; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal.
 
    0.960
AEH02439.1
PFAM: Metallophosphoesterase; KEGG: fba:FIC_01803 hypothetical protein.
 
   
 0.958
AEH02631.1
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
   
 0.943
ligA
DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
    
 0.919
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.800
AEH00951.1
KEGG: cat:CA2559_03580 polysaccharide biosynthesis protein.
   
 0.709
hisB
PFAM: Imidazoleglycerol-phosphate dehydratase; Polynucleotide kinase 3 phosphatase, central region; TIGRFAM: Histidinol-phosphatase; Histidinol-phosphate phosphatase; HAMAP: Imidazoleglycerol-phosphate dehydratase; KEGG: fjo:Fjoh_2875 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; In the C-terminal section; belongs to the imidazoleglycerol-phosphate dehydratase family.
   
 0.652
AEH01728.1
PFAM: Metallophosphoesterase; KEGG: lby:Lbys_0126 metallophosphoesterase.
  
 0.578
AEH01062.1
TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; KEGG: cao:Celal_1168 exodeoxyribonuclease III xth; PFAM: Endonuclease/exonuclease/phosphatase.
  
 
 0.557
Your Current Organism:
Lacinutrix sp. 5H374
NCBI taxonomy Id: 983544
Other names: L. sp. 5H-3-7-4, Lacinutrix sp. 5H-3-7-4
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