STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEE21660.1KEGG: pat:Patl_0626 thymidine kinase; PFAM: thymidine kinase. (194 aa)    
Predicted Functional Partners:
AEE24742.1
TIGRFAM: thymidylate synthase; KEGG: pat:Patl_3837 thymidylate synthase; PFAM: thymidylate synthase.
  
 
 0.971
AEE21766.1
KEGG: pat:Patl_0790 cytidine deaminase; TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding.
 
  
 0.942
AEE23095.1
TIGRFAM: thymidylate kinase; KEGG: pat:Patl_2117 thymidylate kinase; PFAM: thymidylate kinase.
  
 
 0.942
AEE24479.1
PFAM: 5'-Nucleotidase domain-containing protein; KEGG: pat:Patl_3565 5'-nucleotidase-like.
 
  
  0.917
AEE25092.1
KEGG: pat:Patl_0139 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase.
    
  0.902
AEE23180.1
PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: amc:MADE_01071 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region.
    
  0.901
AEE23721.1
PFAM: protein of unknown function DUF1255; KEGG: pat:Patl_1547 hypothetical protein.
     
  0.900
AEE24765.1
KEGG: pat:Patl_3860 stationary-phase survival protein SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE.
     
  0.900
AEE22672.1
KEGG: pat:Patl_2563 peptide chain release factor 1; TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein.
  
  
 0.852
AEE21572.1
TIGRFAM: uridine kinase; KEGG: pat:Patl_0533 uridine kinase.
 
  
 0.673
Your Current Organism:
Glaciecola sp. 4H37YE5
NCBI taxonomy Id: 983545
Other names: G. sp. 4H-3-7+YE-5, Glaciecola sp. 4H-3-7+YE-5
Server load: medium (72%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.