STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEE19296.1Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (365 aa)    
Predicted Functional Partners:
murF
UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
   
 0.961
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
 
 0.960
AEE18107.1
PFAM: alanine dehydrogenase/PNT domain protein; KEGG: cat:CA2559_10273 alanine dehydrogenase.
  
 
 0.933
AEE19334.1
TIGRFAM: alanine dehydrogenase; KEGG: rbi:RB2501_08320 putative alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; Belongs to the AlaDH/PNT family.
  
 
 0.933
tdk
KEGG: gfo:GFO_3354 thymidine kinase; PFAM: thymidine kinase.
       0.826
AEE18476.1
KEGG: mxa:MXAN_0256 aminotransferase, class V; manually curated; PFAM: aminotransferase class V.
    
 0.813
AEE19510.1
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cat:CA2559_04585 hydrolase, carbon-nitrogen family protein.
  
 
  0.807
rsmI
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
 
   0.716
murD
UDP-N-acetylmuramoylalanine/D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
 
 
 
 0.689
AEE19996.1
KEGG: cat:CA2559_00210 hypothetical saccharopine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein.
  
  
 0.678
Your Current Organism:
Dokdonia sp. 4H375
NCBI taxonomy Id: 983548
Other names: D. sp. 4H-3-7-5, Dokdonia sp. 4H-3-7-5, Krokinobacter sp. 4H-3-7-5
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