GSX1 protein (Camelus dromedarius) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GSX1

GS homeobox 1. (262 aa)

Predicted Functional Partners:

SP9

0.731

ASCL1

0.633

SP8

0.626

TSHZ1

0.625

VRK2

0.601

DMRTA2

0.529

PROKR1

0.522

PROKR2

0.522

GAD2

0.514

OLIG3

0.492

Your Current Organism:

Camelus dromedarius

NCBI taxonomy Id: 9838
Other names: Arabian camel, C. dromedarius, camel, dromedaries, dromedary, dromedary camel, one-humped camel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASCL1	GAD2	ENSCDRP00005013993	ENSCDRP00005013368	Achaete-scute-like protein 1.	Glutamate decarboxylase 2.	0.422
ASCL1	GSX1	ENSCDRP00005013993	ENSCDRP00005004932	Achaete-scute-like protein 1.	GS homeobox 1.	0.633
ASCL1	SP8	ENSCDRP00005013993	ENSCDRP00005008754	Achaete-scute-like protein 1.	Transcription factor Sp8.	0.471
ASCL1	SP9	ENSCDRP00005013993	ENSCDRP00005002506	Achaete-scute-like protein 1.	Transcription factor Sp9.	0.604
DMRTA2	GSX1	ENSCDRP00005006580	ENSCDRP00005004932	Doublesex-and mab-3-related transcription factor A2.	GS homeobox 1.	0.529
DMRTA2	PROKR1	ENSCDRP00005006580	ENSCDRP00005011329	Doublesex-and mab-3-related transcription factor A2.	Prokineticin receptor 1.	0.412
DMRTA2	PROKR2	ENSCDRP00005006580	ENSCDRP00005012325	Doublesex-and mab-3-related transcription factor A2.	Prokineticin receptor 2.	0.412
DMRTA2	SP9	ENSCDRP00005006580	ENSCDRP00005002506	Doublesex-and mab-3-related transcription factor A2.	Transcription factor Sp9.	0.497
GAD2	ASCL1	ENSCDRP00005013368	ENSCDRP00005013993	Glutamate decarboxylase 2.	Achaete-scute-like protein 1.	0.422
GAD2	GSX1	ENSCDRP00005013368	ENSCDRP00005004932	Glutamate decarboxylase 2.	GS homeobox 1.	0.514
GAD2	SP9	ENSCDRP00005013368	ENSCDRP00005002506	Glutamate decarboxylase 2.	Transcription factor Sp9.	0.517
GSX1	ASCL1	ENSCDRP00005004932	ENSCDRP00005013993	GS homeobox 1.	Achaete-scute-like protein 1.	0.633
GSX1	DMRTA2	ENSCDRP00005004932	ENSCDRP00005006580	GS homeobox 1.	Doublesex-and mab-3-related transcription factor A2.	0.529
GSX1	GAD2	ENSCDRP00005004932	ENSCDRP00005013368	GS homeobox 1.	Glutamate decarboxylase 2.	0.514
GSX1	OLIG3	ENSCDRP00005004932	ENSCDRP00005021058	GS homeobox 1.	Oligodendrocyte transcription factor 3.	0.492
GSX1	PROKR1	ENSCDRP00005004932	ENSCDRP00005011329	GS homeobox 1.	Prokineticin receptor 1.	0.522
GSX1	PROKR2	ENSCDRP00005004932	ENSCDRP00005012325	GS homeobox 1.	Prokineticin receptor 2.	0.522
GSX1	SP8	ENSCDRP00005004932	ENSCDRP00005008754	GS homeobox 1.	Transcription factor Sp8.	0.626
GSX1	SP9	ENSCDRP00005004932	ENSCDRP00005002506	GS homeobox 1.	Transcription factor Sp9.	0.731
GSX1	TSHZ1	ENSCDRP00005004932	ENSCDRP00005016498	GS homeobox 1.	Teashirt-like protein 1.	0.625