STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pufBLight-harvesting protein B-870 beta chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers (48 aa)    
Predicted Functional Partners:
pufA
Light-harvesting protein B-870 alpha chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers
 
  
 0.995
pufL
Reaction center protein L chain; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis
 
  
 0.992
pufM
Reaction center protein M chain; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis
 
  
 0.990
bchZ
Chlorophyllide reductase subunit Z; Converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole; Belongs to the ChlB/BchB/BchZ family
 
   
 0.980
bchC
annotation not available
 
   
 0.976
bchY
annotation not available
 
   
 0.969
bchX
annotation not available
 
     0.954
RGE_33650
Antenna complex, beta subunit family protein; Previously called ORF2 of Rubrivivax gelatinosus puf operon; protein synonym:ORF74
    
  0.931
pufC
Photosynthetic reaction center cytochrome c subunit; The reaction center of purple bacteria contains a tightly bound cytochrome molecule which re-reduces the photo oxidized primary electron donor
 
  
 0.930
crtE
annotation not available
 
   
 0.897
Your Current Organism:
Rubrivivax gelatinosus
NCBI taxonomy Id: 983917
Other names: R. gelatinosus IL144, Rubrivivax gelatinosus, Rubrivivax gelatinosus IL144, Rubrivivax gelatinosus str. IL144, Rubrivivax gelatinosus strain IL144
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