STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGRA_1206Polysaccharide deacetylase family protein; COG0726 Predicted xylanase/chitin deacetylase. (341 aa)    
Predicted Functional Partners:
SGRA_1207
COG1664 Integral membrane protein CcmA involved in cell shape determination.
       0.779
SGRA_4059
COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
  
 0.559
SGRA_0863
COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
  
  
 0.478
SGRA_2489
COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
  
 0.478
SGRA_4177
COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
  
  
 0.478
djlA
COG1076 DnaJ-domain-containing proteins 1.
       0.449
SGRA_1209
Alpha/beta hydrolase domain-containing protein; COG0657 Esterase/lipase.
     
 0.440
SGRA_3792
COG1358 Ribosomal protein HS6-type (S12/L30/L7a).
 
     0.424
wcaJ
COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
 
   
 0.416
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.