STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SGRA_3696OmpA/MotB domain protein; COG0457 FOG: TPR repeat. (643 aa)    
Predicted Functional Partners:
SGRA_1073
Hypothetical protein.
  
   0.762
SGRA_3015
Membrane protein.
 
     0.757
SGRA_0343
Hypothetical protein.
  
   0.753
SGRA_2555
Beta-glycosidase-like protein.
  
    0.752
gldJ
Gliding motility protein GldJ.
  
    0.752
SGRA_0916
PorT protein.
  
     0.751
SGRA_2235
Hypothetical protein.
  
 
   0.749
SGRA_1722
PKD domain containing protein.
  
     0.742
SGRA_0459
Hypothetical protein.
  
     0.732
SGRA_2359
WD40 domain protein beta Propeller.
  
   0.724
Your Current Organism:
Saprospira grandis
NCBI taxonomy Id: 984262
Other names: S. grandis str. Lewin, Saprospira grandis str. Lewin, Saprospira grandis strain Lewin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.