STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RHBDF1Inactive rhomboid protein 1; Regulates ADAM17 protease, a sheddase of the epidermal growth factor (EGF) receptor ligands and TNF, thereby plays a role in sleep, cell survival, proliferation, migration and inflammation. Does not exhibit any protease activity on its own. (856 aa)    
Predicted Functional Partners:
RHBDD2
Rhomboid domain containing 2.
   
  
 0.783
ADAM17
ADAM metallopeptidase domain 17.
    
 
 0.741
RHBDL1
Rhomboid-related protein 1; May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors; Belongs to the peptidase S54 family.
   
 
 0.741
NPRL3
NPR3 like, GATOR1 complex subunit.
      
 0.723
SNRNP25
U11/U12 small nuclear ribonucleoprotein 25 kDa protein.
      
 0.715
RHBDD3
Rhomboid domain containing 3.
      
 0.675
MPG
N-methylpurine DNA glycosylase.
     
 0.631
TMEM8A
Transmembrane protein 8A.
   
  
 0.619
UBAC2
UBA domain containing 2.
   
  
 0.614
FRMD8
FERM domain containing 8.
   
  
 0.607
Your Current Organism:
Bos taurus
NCBI taxonomy Id: 9913
Other names: B. taurus, Bos bovis, Bos primigenius taurus, Bovidae sp. Adi Nefas, bovine, cattle, cow, dairy cow, domestic cattle, domestic cow
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