Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
C11H2orf49 | ZIC3 | ENSBTAP00000016358 | ENSBTAP00000028546 | Ashwin. | Uncharacterized protein. | 0.669 |
ESRRB | FOXD3 | ENSBTAP00000068235 | ENSBTAP00000011206 | Estrogen related receptor beta. | Forkhead box D3. | 0.437 |
ESRRB | GBX2 | ENSBTAP00000068235 | ENSBTAP00000011716 | Estrogen related receptor beta. | Gastrulation brain homeobox 2. | 0.664 |
ESRRB | LEFTY2 | ENSBTAP00000068235 | ENSBTAP00000049627 | Estrogen related receptor beta. | Left-right determination factor. | 0.576 |
ESRRB | NANOG | ENSBTAP00000068235 | ENSBTAP00000027863 | Estrogen related receptor beta. | Homeobox protein NANOG; Transcription regulator involved in inner cell mass and embryonic stem (ES) cells proliferation and self-renewal. Imposes pluripotency on ES cells and prevents their differentiation towards extraembryonic endoderm and trophectoderm lineages. Blocks bone morphogenetic protein-induced mesoderm differentiation of ES cells by physically interacting with SMAD1 and interfering with the recruitment of coactivators to the active SMAD transcriptional complexes. Acts as a transcriptional activator and repressor. Binds optimally to the DNA consensus sequence 5'-TAAT[GT][GT [...] | 0.856 |
ESRRB | OTX2 | ENSBTAP00000068235 | ENSBTAP00000019616 | Estrogen related receptor beta. | Orthodenticle homeobox 2. | 0.722 |
ESRRB | POU5F1 | ENSBTAP00000068235 | ENSBTAP00000028122 | Estrogen related receptor beta. | POU domain, class 5, transcription factor 1; Transcription factor that binds to the octamer motif (5'- ATTTGCAT-3'). Forms a trimeric complex with SOX2 or SOX15 on DNA and controls the expression of a number of genes involved in embryonic development such as YES1, FGF4, UTF1 and ZFP206. Critical for early embryogenesis and for embryonic stem cell pluripotency (By similarity). Belongs to the POU transcription factor family. Class-5 subfamily. | 0.839 |
ESRRB | TDGF1 | ENSBTAP00000068235 | ENSBTAP00000028139 | Estrogen related receptor beta. | Growth factor; Belongs to the EGF-CFC (Cripto-1/FRL1/Cryptic) family. | 0.544 |
ESRRB | ZIC3 | ENSBTAP00000068235 | ENSBTAP00000028546 | Estrogen related receptor beta. | Uncharacterized protein. | 0.595 |
FOXD3 | ESRRB | ENSBTAP00000011206 | ENSBTAP00000068235 | Forkhead box D3. | Estrogen related receptor beta. | 0.437 |
FOXD3 | NANOG | ENSBTAP00000011206 | ENSBTAP00000027863 | Forkhead box D3. | Homeobox protein NANOG; Transcription regulator involved in inner cell mass and embryonic stem (ES) cells proliferation and self-renewal. Imposes pluripotency on ES cells and prevents their differentiation towards extraembryonic endoderm and trophectoderm lineages. Blocks bone morphogenetic protein-induced mesoderm differentiation of ES cells by physically interacting with SMAD1 and interfering with the recruitment of coactivators to the active SMAD transcriptional complexes. Acts as a transcriptional activator and repressor. Binds optimally to the DNA consensus sequence 5'-TAAT[GT][GT [...] | 0.686 |
FOXD3 | OTX2 | ENSBTAP00000011206 | ENSBTAP00000019616 | Forkhead box D3. | Orthodenticle homeobox 2. | 0.446 |
FOXD3 | POU5F1 | ENSBTAP00000011206 | ENSBTAP00000028122 | Forkhead box D3. | POU domain, class 5, transcription factor 1; Transcription factor that binds to the octamer motif (5'- ATTTGCAT-3'). Forms a trimeric complex with SOX2 or SOX15 on DNA and controls the expression of a number of genes involved in embryonic development such as YES1, FGF4, UTF1 and ZFP206. Critical for early embryogenesis and for embryonic stem cell pluripotency (By similarity). Belongs to the POU transcription factor family. Class-5 subfamily. | 0.858 |
FOXD3 | TDGF1 | ENSBTAP00000011206 | ENSBTAP00000028139 | Forkhead box D3. | Growth factor; Belongs to the EGF-CFC (Cripto-1/FRL1/Cryptic) family. | 0.425 |
FOXD3 | ZIC3 | ENSBTAP00000011206 | ENSBTAP00000028546 | Forkhead box D3. | Uncharacterized protein. | 0.607 |
GBX2 | ESRRB | ENSBTAP00000011716 | ENSBTAP00000068235 | Gastrulation brain homeobox 2. | Estrogen related receptor beta. | 0.664 |
GBX2 | LEFTY2 | ENSBTAP00000011716 | ENSBTAP00000049627 | Gastrulation brain homeobox 2. | Left-right determination factor. | 0.487 |
GBX2 | OTX2 | ENSBTAP00000011716 | ENSBTAP00000019616 | Gastrulation brain homeobox 2. | Orthodenticle homeobox 2. | 0.480 |
GBX2 | POU5F1 | ENSBTAP00000011716 | ENSBTAP00000028122 | Gastrulation brain homeobox 2. | POU domain, class 5, transcription factor 1; Transcription factor that binds to the octamer motif (5'- ATTTGCAT-3'). Forms a trimeric complex with SOX2 or SOX15 on DNA and controls the expression of a number of genes involved in embryonic development such as YES1, FGF4, UTF1 and ZFP206. Critical for early embryogenesis and for embryonic stem cell pluripotency (By similarity). Belongs to the POU transcription factor family. Class-5 subfamily. | 0.586 |
GBX2 | ZIC3 | ENSBTAP00000011716 | ENSBTAP00000028546 | Gastrulation brain homeobox 2. | Uncharacterized protein. | 0.606 |
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