STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL13A1Collagen type XIII alpha 1 chain. (685 aa)    
Predicted Functional Partners:
COL21A1
VWFA domain-containing protein.
 
   
 0.778
COL16A1
Collagen type XVI alpha 1 chain.
  
  
0.726
COL4A6
Collagen type IV alpha 6 chain.
  
  
0.703
COL4A2
Collagen alpha-2(IV) chain; Type IV collagen is the major structural component of glomerular basement membranes (GBM), forming a 'chicken-wire' meshwork together with laminins, proteoglycans and entactin/nidogen. Potently inhibits angiogenesis and tumor growth (By similarity).
  
  
0.702
COL5A3
Collagen type V alpha 3 chain.
  
 
0.695
COL27A1
Collagen type XXVII alpha 1 chain.
  
  
0.695
COL5A1
Collagen type V alpha 1 chain.
  
 
0.688
COL4A1
Collagen alpha-1(IV) chain; Type IV collagen is the major structural component of glomerular basement membranes (GBM), forming a 'chicken-wire' meshwork together with laminins, proteoglycans and entactin/nidogen.
  
  
0.667
PLOD2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.
   
 0.637
COL12A1
Collagen alpha-1(XII) chain.
     
0.631
Your Current Organism:
Bos taurus
NCBI taxonomy Id: 9913
Other names: B. taurus, Bos bovis, Bos primigenius taurus, Bovidae sp. Adi Nefas, bovine, cattle, cow, dairy cow, domestic cattle, domestic cow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.