STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tldDSimilar to E. coli suppresses inhibitory activity of CsrA (AAC76276.1); Blastp hit to AAC76276.1 (481 aa), 94% identity in aa 1 - 481. (481 aa)    
Predicted Functional Partners:
lonH
Similar to E. coli putative ATP-dependent protease (AAC74041.1); Blastp hit to AAC74041.1 (586 aa), 85% identity in aa 1 - 586.
   
  
 0.895
pmbA
Putative peptide maturation protein; Maturation of antibiotic MccB17; see tld genes; similar to E. coli maturation of antibiotic MccB17, see tld genes (AAC77192.1); Blastp hit to AAC77192.1 (450 aa), 95% identity in aa 1 - 450.
 
 
0.867
yhdP
Putative protease; Similar to E. coli orf, hypothetical protein (AAC76277.1); Blastp hit to AAC76277.1 (986 aa), 80% identity in aa 1 - 986.
  
  
 0.843
yjeH
Putative transporter; Cytoplasmic membrane protein; similar to E. coli putative transport (AAC77101.1); Blastp hit to AAC77101.1 (418 aa), 71% identity in aa 1 - 410.
      
 0.681
potG
Putrescine transporter; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
      
 0.537
ptrB
Protease II; Similar to E. coli protease II (AAC74915.1); Blastp hit to AAC74915.1 (686 aa), 89% identity in aa 1 - 680.
      
 0.506
deoR
Similar to E. coli transcriptional repressor for deo operon, tsx, nupG (AAC73927.1); Blastp hit to AAC73927.1 (252 aa), 83% identity in aa 1 - 252.
      
 0.465
purB
Similar to E. coli adenylosuccinate lyase (AAC74215.1); Blastp hit to AAC74215.1 (456 aa), 94% identity in aa 1 - 456.
     
 0.461
wecF-2
Putative inner membrane protein; Catalyzes the synthesis of Und-PP-GlcNAc-ManNAcA-Fuc4NAc (Lipid III), the third lipid-linked intermediate involved in ECA synthesis; Belongs to the glycosyltransferase 56 family.
      
 0.459
yggB
Putative membrane protein; Involved in stability of MscS mechanosensitive channel; similar to E. coli putative transport protein (AAC75961.1); Blastp hit to AAC75961.1 (286 aa), 91% identity in aa 1 - 285.
   
  
 0.456
Your Current Organism:
Salmonella enterica Typhimurium
NCBI taxonomy Id: 99287
Other names: S. enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium LT2, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2, Salmonella enterica subsp. enterica serovar Typhimurium strain LT2-LTL2, Salmonella typhimurium LT2
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