STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ72372.1Glucose/arabinose dehydrogenase, beta-propeller fold. (373 aa)    
Predicted Functional Partners:
SDQ88024.1
Sugar lactone lactonase YvrE.
    
 0.695
SDQ31225.1
Glyoxalase family protein.
    
  0.689
SDQ32854.1
Glyoxalase family protein.
    
  0.689
SDQ36186.1
2-oxoisovalerate dehydrogenase E1 component.
   
 
  0.654
SDQ13491.1
Protein of unknown function.
  
     0.550
SDR19739.1
TIGR02569 family protein.
  
    0.497
SDR19559.1
Hypothetical protein.
  
     0.489
SDQ08008.1
LytR cell envelope-related transcriptional attenuator.
  
     0.484
SDR18006.1
Hypothetical protein.
  
     0.479
SDQ72256.1
PH domain-containing protein.
 
     0.476
Your Current Organism:
Actinopolyspora saharensis
NCBI taxonomy Id: 995062
Other names: A. saharensis, Actinopolyspora saharensis Meklat et al. 2013 emend. Nouioui et al. 2018, Actinopolyspora sp. H32, CCUG 62966, DSM 45459, strain H32
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.