STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ82993.1Hypothetical protein. (562 aa)    
Predicted Functional Partners:
SDQ83017.1
EspG family protein.
 
     0.946
SDR13761.1
Type VII secretion protein EccE.
  
 
   0.828
SDR15611.1
Protein of unknown function.
  
 
  0.823
SDQ86567.1
Protein of unknown function.
  
 
  0.821
SDQ86592.1
Hypothetical protein.
  
   0.792
SDQ86942.1
EspG family protein.
 
  
 0.778
SDQ31434.1
EspG family protein.
  
     0.770
SDQ85787.1
Hypothetical protein.
  
 
  0.767
SDR15301.1
Hypothetical protein.
  
 
   0.767
SDR12466.1
Hypothetical protein.
  
     0.766
Your Current Organism:
Actinopolyspora saharensis
NCBI taxonomy Id: 995062
Other names: A. saharensis, Actinopolyspora saharensis Meklat et al. 2013 emend. Nouioui et al. 2018, Actinopolyspora sp. H32, CCUG 62966, DSM 45459, strain H32
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.