STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECM1Extracellular matrix protein 1. (563 aa)    
Predicted Functional Partners:
MRC1
Mannose receptor C-type 1.
     
 0.679
ZBTB44
Zinc finger and BTB domain containing 44.
    
 
 0.637
DDX52
DExD-box helicase 52.
      
 0.635
SLC39A13
Solute carrier family 39 member 13.
      
 0.635
SLC15A2
Solute carrier family 15 member 2; Proton-coupled intake of oligopeptides of 2 to 4 amino acids with a preference for dipeptides. Transports the dipeptide-like aminopeptidase inhibitor bestatin (By similarity). Can also transport the aminocephalosporin antibiotic cefadroxil ; Belongs to the PTR2/POT transporter (TC 2.A.17) family.
   
  
 0.632
PRL
Prolactin; Prolactin acts primarily on the mammary gland by promoting lactation.
      
 0.627
ZSWIM8
Zinc finger SWIM-type containing 8.
      
 0.625
BMS1
BMS1 ribosome biogenesis factor.
      
 0.618
CLEC3B
Uncharacterized protein.
     
 0.580
GZMH
Granzyme H; Belongs to the peptidase S1 family.
    
 0.557
Your Current Organism:
Oryctolagus cuniculus
NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits
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