Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABCA1 | APP | ENSOCUP00000046484 | ENSOCUP00000009130 | ATP binding cassette subfamily A member 1. | Gamma-secretase C-terminal fragment 57; Functions as a cell surface receptor and performs physiological functions on the surface of neurons relevant to neurite growth, neuronal adhesion and axonogenesis. Interaction between APP molecules on neighboring cells promotes synaptogenesis. Involved in cell mobility and transcription regulation through protein-protein interactions (By similarity). Can promote transcription activation through binding to APBB1-KAT5 and inhibit Notch signaling through interaction with Numb (By similarity). Couples to apoptosis-inducing pathways such as those medi [...] | 0.548 |
ABCA1 | ZIC3 | ENSOCUP00000046484 | ENSOCUP00000015617 | ATP binding cassette subfamily A member 1. | Zic family member 3. | 0.558 |
APP | ABCA1 | ENSOCUP00000009130 | ENSOCUP00000046484 | Gamma-secretase C-terminal fragment 57; Functions as a cell surface receptor and performs physiological functions on the surface of neurons relevant to neurite growth, neuronal adhesion and axonogenesis. Interaction between APP molecules on neighboring cells promotes synaptogenesis. Involved in cell mobility and transcription regulation through protein-protein interactions (By similarity). Can promote transcription activation through binding to APBB1-KAT5 and inhibit Notch signaling through interaction with Numb (By similarity). Couples to apoptosis-inducing pathways such as those medi [...] | ATP binding cassette subfamily A member 1. | 0.548 |
APP | ZIC3 | ENSOCUP00000009130 | ENSOCUP00000015617 | Gamma-secretase C-terminal fragment 57; Functions as a cell surface receptor and performs physiological functions on the surface of neurons relevant to neurite growth, neuronal adhesion and axonogenesis. Interaction between APP molecules on neighboring cells promotes synaptogenesis. Involved in cell mobility and transcription regulation through protein-protein interactions (By similarity). Can promote transcription activation through binding to APBB1-KAT5 and inhibit Notch signaling through interaction with Numb (By similarity). Couples to apoptosis-inducing pathways such as those medi [...] | Zic family member 3. | 0.629 |
ESRRB | NANOG | ENSOCUP00000041603 | ENSOCUP00000022082 | Estrogen related receptor beta. | Homeobox domain-containing protein. | 0.894 |
ESRRB | OTX2 | ENSOCUP00000041603 | ENSOCUP00000002270 | Estrogen related receptor beta. | Orthodenticle homeobox 2. | 0.696 |
ESRRB | POU5F1 | ENSOCUP00000041603 | ENSOCUP00000014745 | Estrogen related receptor beta. | POU domain protein. | 0.868 |
ESRRB | TDGF1 | ENSOCUP00000041603 | ENSOCUP00000042810 | Estrogen related receptor beta. | EGF-like domain-containing protein. | 0.544 |
ESRRB | ZIC3 | ENSOCUP00000041603 | ENSOCUP00000015617 | Estrogen related receptor beta. | Zic family member 3. | 0.629 |
LHX5 | ZIC3 | ENSOCUP00000008044 | ENSOCUP00000015617 | LIM homeobox 5. | Zic family member 3. | 0.497 |
MDFI | ZIC3 | ENSOCUP00000049597 | ENSOCUP00000015617 | MyoD family inhibitor (Predicted). | Zic family member 3. | 0.518 |
NANOG | ESRRB | ENSOCUP00000022082 | ENSOCUP00000041603 | Homeobox domain-containing protein. | Estrogen related receptor beta. | 0.894 |
NANOG | NODAL | ENSOCUP00000022082 | ENSOCUP00000007498 | Homeobox domain-containing protein. | Nodal growth differentiation factor. | 0.602 |
NANOG | OTX2 | ENSOCUP00000022082 | ENSOCUP00000002270 | Homeobox domain-containing protein. | Orthodenticle homeobox 2. | 0.426 |
NANOG | POU5F1 | ENSOCUP00000022082 | ENSOCUP00000014745 | Homeobox domain-containing protein. | POU domain protein. | 0.997 |
NANOG | TDGF1 | ENSOCUP00000022082 | ENSOCUP00000042810 | Homeobox domain-containing protein. | EGF-like domain-containing protein. | 0.769 |
NANOG | ZIC3 | ENSOCUP00000022082 | ENSOCUP00000015617 | Homeobox domain-containing protein. | Zic family member 3. | 0.687 |
NODAL | NANOG | ENSOCUP00000007498 | ENSOCUP00000022082 | Nodal growth differentiation factor. | Homeobox domain-containing protein. | 0.602 |
NODAL | OTX2 | ENSOCUP00000007498 | ENSOCUP00000002270 | Nodal growth differentiation factor. | Orthodenticle homeobox 2. | 0.404 |
NODAL | POU5F1 | ENSOCUP00000007498 | ENSOCUP00000014745 | Nodal growth differentiation factor. | POU domain protein. | 0.576 |
page 1 of 3