TAF4B protein (Oryctolagus cuniculus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TAF4B

TATA-box binding protein associated factor 4b. (837 aa)

Predicted Functional Partners:

TAF6

0.978

TAF2

0.978

TAF1

0.978

TAF10

0.977

TAF12

0.973

G1TWQ7_RABIT

0.967

TAF13

0.967

TAF3

0.965

TAF5

0.964

TAF11

0.959

Your Current Organism:

Oryctolagus cuniculus

NCBI taxonomy Id: 9986
Other names: European rabbit, Japanese white rabbit, Lepus cuniculus, New Zealand rabbit, O. cuniculus, domestic rabbit, rabbit, rabbits

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G1TWQ7_RABIT	TAF1	ENSOCUP00000021504	ENSOCUP00000045517	TAFH domain-containing protein.	Transcription initiation factor TFIID subunit.	0.978
G1TWQ7_RABIT	TAF10	ENSOCUP00000021504	ENSOCUP00000005701	TAFH domain-containing protein.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.998
G1TWQ7_RABIT	TAF11	ENSOCUP00000021504	ENSOCUP00000001747	TAFH domain-containing protein.	TAFII28 domain-containing protein.	0.959
G1TWQ7_RABIT	TAF12	ENSOCUP00000021504	ENSOCUP00000003412	TAFH domain-containing protein.	TATA-box binding protein associated factor 12.	0.998
G1TWQ7_RABIT	TAF13	ENSOCUP00000021504	ENSOCUP00000035489	TAFH domain-containing protein.	TATA-box binding protein associated factor 13.	0.969
G1TWQ7_RABIT	TAF2	ENSOCUP00000021504	ENSOCUP00000044208	TAFH domain-containing protein.	TATA-box binding protein associated factor 2.	0.982
G1TWQ7_RABIT	TAF3	ENSOCUP00000021504	ENSOCUP00000021444	TAFH domain-containing protein.	TATA-box binding protein associated factor 3.	0.977
G1TWQ7_RABIT	TAF4B	ENSOCUP00000021504	ENSOCUP00000025422	TAFH domain-containing protein.	TATA-box binding protein associated factor 4b.	0.967
G1TWQ7_RABIT	TAF5	ENSOCUP00000021504	ENSOCUP00000005450	TAFH domain-containing protein.	TATA-box binding protein associated factor 5.	0.998
G1TWQ7_RABIT	TAF6	ENSOCUP00000021504	ENSOCUP00000018409	TAFH domain-containing protein.	TATA-box binding protein associated factor 6.	0.998
TAF1	G1TWQ7_RABIT	ENSOCUP00000045517	ENSOCUP00000021504	Transcription initiation factor TFIID subunit.	TAFH domain-containing protein.	0.978
TAF1	TAF10	ENSOCUP00000045517	ENSOCUP00000005701	Transcription initiation factor TFIID subunit.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.999
TAF1	TAF11	ENSOCUP00000045517	ENSOCUP00000001747	Transcription initiation factor TFIID subunit.	TAFII28 domain-containing protein.	0.992
TAF1	TAF12	ENSOCUP00000045517	ENSOCUP00000003412	Transcription initiation factor TFIID subunit.	TATA-box binding protein associated factor 12.	0.991
TAF1	TAF13	ENSOCUP00000045517	ENSOCUP00000035489	Transcription initiation factor TFIID subunit.	TATA-box binding protein associated factor 13.	0.999
TAF1	TAF2	ENSOCUP00000045517	ENSOCUP00000044208	Transcription initiation factor TFIID subunit.	TATA-box binding protein associated factor 2.	0.999
TAF1	TAF3	ENSOCUP00000045517	ENSOCUP00000021444	Transcription initiation factor TFIID subunit.	TATA-box binding protein associated factor 3.	0.998
TAF1	TAF4B	ENSOCUP00000045517	ENSOCUP00000025422	Transcription initiation factor TFIID subunit.	TATA-box binding protein associated factor 4b.	0.978
TAF1	TAF5	ENSOCUP00000045517	ENSOCUP00000005450	Transcription initiation factor TFIID subunit.	TATA-box binding protein associated factor 5.	0.994
TAF1	TAF6	ENSOCUP00000045517	ENSOCUP00000018409	Transcription initiation factor TFIID subunit.	TATA-box binding protein associated factor 6.	0.999