OR10960-6 protein (Tetraodon nigroviridis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OR10960-6

Odorant receptor, family H, subfamily 134, member 1. (305 aa)

Predicted Functional Partners:

OR14677-8

0.591

H3D7N0_TETNG

0.495

H3CJE6_TETNG

0.461

H3DH20_TETNG

0.422

H3D8R1_TETNG

0.416

H3DQ28_TETNG

0.401

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3CJE6_TETNG	H3D7N0_TETNG	ENSTNIP00000008375	ENSTNIP00000016521	RNA binding motif protein 4.3.	N(alpha)-acetyltransferase 25, NatB auxiliary subunit.	0.461
H3CJE6_TETNG	OR10960-6	ENSTNIP00000008375	ENSTNIP00000001342	RNA binding motif protein 4.3.	Odorant receptor, family H, subfamily 134, member 1.	0.461
H3D7N0_TETNG	H3CJE6_TETNG	ENSTNIP00000016521	ENSTNIP00000008375	N(alpha)-acetyltransferase 25, NatB auxiliary subunit.	RNA binding motif protein 4.3.	0.461
H3D7N0_TETNG	OR10960-6	ENSTNIP00000016521	ENSTNIP00000001342	N(alpha)-acetyltransferase 25, NatB auxiliary subunit.	Odorant receptor, family H, subfamily 134, member 1.	0.495
H3D8R1_TETNG	OR10960-6	ENSTNIP00000016902	ENSTNIP00000001342	Immunoglobulin-like domain containing receptor 1b.	Odorant receptor, family H, subfamily 134, member 1.	0.416
H3DH20_TETNG	OR10960-6	ENSTNIP00000019814	ENSTNIP00000001342	Hcy-binding domain-containing protein; Involved in the regulation of homocysteine metabolism.	Odorant receptor, family H, subfamily 134, member 1.	0.422
H3DQ28_TETNG	OR10960-6	ENSTNIP00000022627	ENSTNIP00000001342	Uncharacterized protein.	Odorant receptor, family H, subfamily 134, member 1.	0.401
OR10960-6	H3CJE6_TETNG	ENSTNIP00000001342	ENSTNIP00000008375	Odorant receptor, family H, subfamily 134, member 1.	RNA binding motif protein 4.3.	0.461
OR10960-6	H3D7N0_TETNG	ENSTNIP00000001342	ENSTNIP00000016521	Odorant receptor, family H, subfamily 134, member 1.	N(alpha)-acetyltransferase 25, NatB auxiliary subunit.	0.495
OR10960-6	H3D8R1_TETNG	ENSTNIP00000001342	ENSTNIP00000016902	Odorant receptor, family H, subfamily 134, member 1.	Immunoglobulin-like domain containing receptor 1b.	0.416
OR10960-6	H3DH20_TETNG	ENSTNIP00000001342	ENSTNIP00000019814	Odorant receptor, family H, subfamily 134, member 1.	Hcy-binding domain-containing protein; Involved in the regulation of homocysteine metabolism.	0.422
OR10960-6	H3DQ28_TETNG	ENSTNIP00000001342	ENSTNIP00000022627	Odorant receptor, family H, subfamily 134, member 1.	Uncharacterized protein.	0.401
OR10960-6	OR14677-8	ENSTNIP00000001342	ENSTNIP00000014154	Odorant receptor, family H, subfamily 134, member 1.	Olfactory receptor.	0.591
OR14677-8	OR10960-6	ENSTNIP00000014154	ENSTNIP00000001342	Olfactory receptor.	Odorant receptor, family H, subfamily 134, member 1.	0.591