H3CXJ7_TETNG protein (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H3CXJ7_TETNG

Snf2-related CREBBP activator protein. (2171 aa)

Predicted Functional Partners:

Q4RXV2_TETNG

0.865

Q4SLD9_TETNG

0.863

H3DDK9_TETNG

0.852

H3DDM5_TETNG

0.852

H3CUU0_TETNG

0.848

H3C4Q2_TETNG

0.821

H3CAH0_TETNG

0.738

H3CG56_TETNG

0.702

H3CA73_TETNG

0.687

H3DGW8_TETNG

0.687

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3C4Q2_TETNG	H3CA73_TETNG	ENSTNIP00000003221	ENSTNIP00000005145	YEATS domain containing 4.	AT rich interactive domain 4A (RBP1-like).	0.699
H3C4Q2_TETNG	H3CAH0_TETNG	ENSTNIP00000003221	ENSTNIP00000005242	YEATS domain containing 4.	Actin related protein 6; Belongs to the actin family.	0.808
H3C4Q2_TETNG	H3CG56_TETNG	ENSTNIP00000003221	ENSTNIP00000007233	YEATS domain containing 4.	MYST/Esa1-associated factor 6.	0.976
H3C4Q2_TETNG	H3CUU0_TETNG	ENSTNIP00000003221	ENSTNIP00000012024	YEATS domain containing 4.	Vacuolar protein sorting 72 homolog a.	0.972
H3C4Q2_TETNG	H3CXJ7_TETNG	ENSTNIP00000003221	ENSTNIP00000012982	YEATS domain containing 4.	Snf2-related CREBBP activator protein.	0.821
H3C4Q2_TETNG	H3DDK9_TETNG	ENSTNIP00000003221	ENSTNIP00000018602	YEATS domain containing 4.	DNA methyltransferase 1 associated protein 1.	0.983
H3C4Q2_TETNG	H3DDM5_TETNG	ENSTNIP00000003221	ENSTNIP00000018618	YEATS domain containing 4.	Actin-like 6A; Belongs to the actin family.	0.961
H3C4Q2_TETNG	H3DGW8_TETNG	ENSTNIP00000003221	ENSTNIP00000019762	YEATS domain containing 4.	Translocase of outer mitochondrial membrane 20.	0.699
H3C4Q2_TETNG	Q4RXV2_TETNG	ENSTNIP00000003221	ENSTNIP00000017629	YEATS domain containing 4.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.976
H3C4Q2_TETNG	Q4SLD9_TETNG	ENSTNIP00000003221	ENSTNIP00000011409	YEATS domain containing 4.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.968
H3CA73_TETNG	H3C4Q2_TETNG	ENSTNIP00000005145	ENSTNIP00000003221	AT rich interactive domain 4A (RBP1-like).	YEATS domain containing 4.	0.699
H3CA73_TETNG	H3CG56_TETNG	ENSTNIP00000005145	ENSTNIP00000007233	AT rich interactive domain 4A (RBP1-like).	MYST/Esa1-associated factor 6.	0.747
H3CA73_TETNG	H3CUU0_TETNG	ENSTNIP00000005145	ENSTNIP00000012024	AT rich interactive domain 4A (RBP1-like).	Vacuolar protein sorting 72 homolog a.	0.746
H3CA73_TETNG	H3CXJ7_TETNG	ENSTNIP00000005145	ENSTNIP00000012982	AT rich interactive domain 4A (RBP1-like).	Snf2-related CREBBP activator protein.	0.687
H3CA73_TETNG	H3DDK9_TETNG	ENSTNIP00000005145	ENSTNIP00000018602	AT rich interactive domain 4A (RBP1-like).	DNA methyltransferase 1 associated protein 1.	0.790
H3CA73_TETNG	H3DDM5_TETNG	ENSTNIP00000005145	ENSTNIP00000018618	AT rich interactive domain 4A (RBP1-like).	Actin-like 6A; Belongs to the actin family.	0.986
H3CA73_TETNG	H3DGW8_TETNG	ENSTNIP00000005145	ENSTNIP00000019762	AT rich interactive domain 4A (RBP1-like).	Translocase of outer mitochondrial membrane 20.	0.649
H3CA73_TETNG	Q4RXV2_TETNG	ENSTNIP00000005145	ENSTNIP00000017629	AT rich interactive domain 4A (RBP1-like).	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.612
H3CA73_TETNG	Q4SLD9_TETNG	ENSTNIP00000005145	ENSTNIP00000011409	AT rich interactive domain 4A (RBP1-like).	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.726
H3CAH0_TETNG	H3C4Q2_TETNG	ENSTNIP00000005242	ENSTNIP00000003221	Actin related protein 6; Belongs to the actin family.	YEATS domain containing 4.	0.808