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STRINGSTRING
slr0460 slr0460 sll1982 sll1982 sll0092 sll0092 sll0667 sll0667 sll1560 sll1560 slr1421 slr1421 slr0099 slr0099 slr2119 slr2119 slr1522 slr1522 sll1571 sll1571 slr1683 slr1683
"sll1560" - Transposase in Synechocystis sp. PCC6803
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sll1560Transposase (338 aa)    
Predicted Functional Partners:
sll1571
Hypothetical protein (313 aa)
   
          0.634
slr0460
Transposase (157 aa)
   
          0.615
slr2119
Hypothetical protein (278 aa)
   
          0.599
sll1982
Transposase (237 aa)
   
          0.599
slr1522
Transposase (358 aa)
   
          0.597
slr0099
Transposase (339 aa)
   
          0.574
slr1683
Transposase (131 aa)
              0.574
sll0092
Transposase (228 aa)
   
          0.563
sll0667
Transposase (219 aa)
   
          0.539
slr1421
Hypothetical protein (107 aa)
   
          0.517
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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