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ssr3300 ssr3300 slr1940 slr1940 rsmB rsmB rsgA rsgA prlC prlC slr1939 slr1939 sll0877 sll0877 slr0240 slr0240 petH petH prmC prmC
"slr1939" - Hypothetical protein in Synechocystis sp. PCC6803
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slr1939Hypothetical protein (669 aa)    
Predicted Functional Partners:
slr1940
Hypothetical protein (482 aa)
              0.604
slr0240
Hypothetical protein (140 aa)
 
        0.458
sll0877
Hypothetical protein (456 aa)
   
          0.445
ssr3300
Hypothetical protein (83 aa)
              0.433
prmC
Protoporphyrinogen oxidase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif (299 aa)
         
  0.426
prlC
Oligopeptidase A (694 aa)
     
      0.421
petH
ferredoxin-NADP oxidoreductase; Essential for growth (413 aa)
     
      0.414
rsgA
Hypothetical protein; May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover (369 aa)
              0.406
rsmB
Fmu and Fmv protein (446 aa)
              0.406
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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