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slr0230 slr0230 slr1924 slr1924 rbfA rbfA ycf33 ycf33 ssr2611 ssr2611 ycf35 ycf35 sll0822 sll0822 sll1507 sll1507 psbF psbF sll0860 sll0860 slr1949 slr1949
"ycf33" - Conserved hypothetical protein Ycf33 in Synechocystis sp. PCC6803
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
ycf33Conserved hypothetical protein Ycf33 (66 aa)    
Predicted Functional Partners:
ycf35
Conserved hypothetical protein Ycf35 (128 aa)
   
     
  0.905
psbF
Cytochrome b559 b subunit; This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water-plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation (44 aa)
   
     
  0.837
slr0230
Transposase (282 aa)
           
  0.829
sll1507
Hypothetical protein (181 aa)
   
     
  0.786
sll0822
Hypothetical protein (129 aa)
   
          0.759
sll0860
Hypothetical protein (173 aa)
   
          0.758
slr1949
Hypothetical protein (212 aa)
   
          0.756
slr1924
D-alanyl-D-alanine carboxypeptidase (400 aa)
           
  0.750
ssr2611
Hypothetical protein (65 aa)
   
          0.740
rbfA
Ribosome-binding factor A; Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5’-terminal helix region of 16S rRNA (133 aa)
              0.729
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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