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STRINGSTRING
ssr2554 ssr2554 sll0489 sll0489 norB norB sll0415 sll0415 slr2105 slr2105 sll0778 sll0778 slr0347 slr0347 sll0759 sll0759 slr1113 slr1113 hypF hypF sll0321 sll0321
"slr0347" - Hypothetical protein in Synechocystis sp. PCC6803
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slr0347Hypothetical protein (261 aa)    
Predicted Functional Partners:
sll0489
ABC transporter (342 aa)
 
 
  0.959
slr2105
Hypothetical protein (595 aa)
 
   
  0.870
sll0415
ABC transporter (354 aa)
 
 
  0.852
sll0778
ABC transporter (790 aa)
   
 
  0.837
sll0759
ABC transporter (347 aa)
   
 
  0.824
slr1113
ABC transporter (332 aa)
   
 
  0.824
sll0321
Hypothetical protein (498 aa)
              0.616
norB
Cytochrome b subunit of nitric oxide reductase (770 aa)
   
 
    0.532
ssr2554
Hypothetical protein (88 aa)
   
          0.518
hypF
Transcriptional regulatory protein HypF; Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide (By similarity) (767 aa)
              0.514
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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