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ubiX ubiX sll0936 sll0936 menG menG sll0005 sll0005 recG recG slr0407 slr0407 chlM chlM hisI hisI sll1499 sll1499 SYNGTS_2240 SYNGTS_2240 gltB gltB
"sll0005" - ABC1-like in Synechocystis sp. PCC6803
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sll0005ABC1-like (681 aa)    
Predicted Functional Partners:
chlM
Mg-protoporphyrin IX methyl transferase; Converts Mg-protoporphyrin IX to Mg-protoporphyrin IX methylester using S-adenosyl-L-methionine as a cofactor (230 aa)
     
  0.815
sll0936
Hypothetical protein (501 aa)
   
 
  0.720
ubiX
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3- polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN (206 aa)
   
 
  0.709
slr0407
Hypothetical protein (270 aa)
   
 
  0.705
menG
2-phytyl-1,4-benzoquinone methyltransferase; Methyltransferase required for the conversion of 2- phytyl-1,4-beta-naphthoquinone to phylloquinone (238 aa)
   
 
  0.705
hisI
phosphoribosyl-ATP pyrophosphohydrolase (215 aa)
              0.604
recG
DNA recombinase; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3’- to 5’- polarity. Unwinds branched duplex DNA (Y-DNA) (By similarity) (831 aa)
   
        0.595
SYNGTS_2240
Aspartate aminotransferase (394 aa)
   
        0.592
sll1499
Ferredoxin-dependent glutamate synthase (1556 aa)
   
   
  0.552
gltB
Ferredoxin-dependent glutamate synthase (1550 aa)
   
   
  0.552
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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