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ycf40 ycf40 rnz rnz slr0049 slr0049 sll0400 sll0400 slr0440 slr0440 icfG icfG slr2031 slr2031 slr1917 slr1917
"slr0440" - Hypothetical protein in Synechocystis sp. PCC6803
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slr0440Hypothetical protein (267 aa)    
Predicted Functional Partners:
sll0400
Hypothetical protein (164 aa)
              0.650
slr0049
Hypothetical protein (398 aa)
              0.601
ycf40
Hypothetical protein (71 aa)
              0.544
icfG
ICFG protein; Involved in cross-regulation of inorganic carbon and glucose metabolisms (634 aa)
         
  0.491
slr2031
Sigma factor SigG regulation protein RsbU (452 aa)
         
  0.491
slr1917
Hypothetical protein (302 aa)
   
          0.440
rnz
Hypothetical protein; Zinc phosphodiesterase, which displays some tRNA 3’- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3’-trailer from precursor tRNA (326 aa)
              0.418
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis, Synechocystis PCC6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B, Synechocystis sp. PCC6803
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