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xerC xerC Daro_0193 Daro_0193 Daro_3503 Daro_3503 Daro_2435 Daro_2435 dapF dapF Daro_0207 Daro_0207 Daro_1645 Daro_1645 Daro_0939 Daro_0939 dapA dapA dapE dapE dapB dapB
"dapF" - Diaminopimelate epimerase in Dechloromonas aromatica
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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dapFDiaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (276 aa)    
Predicted Functional Partners:
Daro_0207
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine (420 aa)
 
 
  0.981
Daro_1645
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine (416 aa)
 
 
  0.981
Daro_2435
Orn/DAP/Arg decarboxylase 2 (412 aa)
 
 
  0.977
Daro_3503
UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (492 aa)
 
 
  0.956
dapE
Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls (377 aa)
       
  0.950
Daro_0939
Carbamoyl phosphate synthase large subunit (1068 aa)
 
   
  0.904
Daro_0193
Hypothetical protein (223 aa)
   
        0.903
xerC
Tyrosine recombinase XerC subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC-XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids (295 aa)
   
        0.893
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta- semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) (292 aa)
 
   
  0.889
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate (268 aa)
 
   
  0.851
Your Current Organism:
Dechloromonas aromatica
NCBI taxonomy Id: 159087
Other names: D. aromatica, D. aromatica RCB, Dechloromonas, Dechloromonas Achenbach et al. 2001, Dechloromonas aromatica, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB
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