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tldD tldD pmbA pmbA PSPTO_3361 PSPTO_3361 rsgA rsgA PSPTO_4148 PSPTO_4148 PSPTO_4464 PSPTO_4464 mgtE mgtE PSPTO_3764 PSPTO_3764 PSPTO_5517 PSPTO_5517 PSPTO_4115 PSPTO_4115 PSPTO_3848 PSPTO_3848
"PSPTO_4464" - Hypothetical protein in Pseudomonas syringae tomato
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSPTO_4464Hypothetical protein (173 aa)    
Predicted Functional Partners:
pmbA
pmbA protein (448 aa)
   
        0.786
PSPTO_5517
Hypothetical protein (280 aa)
   
          0.628
PSPTO_3764
Hypothetical protein (551 aa)
   
          0.562
PSPTO_3361
Hypothetical protein (388 aa)
   
        0.547
PSPTO_4148
(Fe-S)-binding protein; Part of a membrane complex involved in electron transport (291 aa)
   
          0.510
PSPTO_3848
DNA internalization-related competence protein ComEC/Rec2 (738 aa)
   
        0.498
mgtE
Magnesium transporter; Acts as a magnesium transporter (480 aa)
 
          0.492
tldD
tldD protein (479 aa)
   
        0.458
rsgA
Hypothetical protein; May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover (343 aa)
   
          0.449
PSPTO_4115
Lipoprotein SlyB (154 aa)
   
          0.438
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato, P. syringae pv. tomato str. DC3000, Pseudomonas syringae (PV. TOMATO), Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. DC3000, Pseudomonas syringae tomato
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