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rpmA rpmA fumB fumB PG_1719 PG_1719 xth xth polA polA PG_0272 PG_0272 fabG fabG oxyR oxyR ssb ssb PG_0274 PG_0274 PG_0273 PG_0273
"PG_0272" - Hypothetical protein in Porphyromonas gingivalis W83
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PG_0272Hypothetical protein (419 aa)    
Predicted Functional Partners:
fabG
3-oxoacyl-ACP reductase (248 aa)
   
 
    0.777
ssb
ssDNA-binding protein (156 aa)
              0.758
PG_0273
4’-phosphopantetheinyl transferase (198 aa)
              0.756
fumB
Fumarate hydratase class I, anaerobic (548 aa)
   
        0.676
PG_0274
Hypothetical protein (122 aa)
              0.613
rpmA
Ribosomal protein L27 (85 aa)
   
      0.591
polA
DNA polymerase type I (926 aa)
   
   
  0.525
PG_1719
ABC transporter ATP-binding protein (616 aa)
 
   
  0.516
oxyR
Redox-sensitive transcriptional activator OxyR (308 aa)
              0.510
xth
Exodeoxyribonuclease III (254 aa)
   
        0.450
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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