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STRINGSTRING
Phatr34441 Phatr34441 Phatr10054 Phatr10054 Phatr48122 Phatr48122 Phatr43556 Phatr43556 Phatr7784 Phatr7784 Phatr11336 Phatr11336 Phatr3527 Phatr3527 Phatr11792 Phatr11792 Phatr14996 Phatr14996 Phatr15980 Phatr15980 Phatr14988 Phatr14988
"Phatr10054" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr10054Predicted protein (259 aa)    
Predicted Functional Partners:
Phatr34441
Predicted protein (286 aa)
         
  0.557
Phatr11792
Predicted protein (278 aa)
   
          0.467
Phatr7784
Predicted protein (79 aa)
   
          0.446
Phatr43556
Predicted protein (249 aa)
   
          0.441
Phatr11336
Predicted protein (270 aa)
   
          0.441
Phatr48122
Predicted protein (366 aa)
   
          0.440
Phatr15980
Predicted protein (119 aa)
   
          0.433
Phatr3527
Predicted protein (233 aa)
   
          0.420
Phatr14988
Predicted protein (164 aa)
   
          0.412
Phatr14996
Predicted protein (85 aa)
   
          0.407
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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