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STRINGSTRING
Phatr42944 Phatr42944 Phatr50228 Phatr50228 Phatr45009 Phatr45009 Phatr47054 Phatr47054 Phatr10199 Phatr10199 Phatr30925 Phatr30925 Phatr15555 Phatr15555 Phatr47179 Phatr47179 Phatr25420 Phatr25420 Phatr13566 Phatr13566 Phatr24775 Phatr24775
"Phatr10199" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr10199Predicted protein (203 aa)    
Predicted Functional Partners:
Phatr42944
Predicted protein (1422 aa)
     
  0.991
Phatr30925
Predicted protein (601 aa)
     
  0.989
Phatr13566
Predicted protein (320 aa)
   
  0.985
Phatr45009
Predicted protein (498 aa)
     
  0.981
Phatr50228
Predicted protein (904 aa)
       
  0.981
Phatr47054
Predicted protein (450 aa)
       
  0.979
Phatr15555
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1706 aa)
     
  0.977
Phatr47179
Predicted protein (902 aa)
       
  0.974
Phatr24775
Predicted protein (711 aa)
       
  0.974
Phatr25420
Predicted protein (228 aa)
     
  0.972
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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