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STRINGSTRING
Phatr15032 Phatr15032 Phatr31906 Phatr31906 GAPN GAPN ACL ACL TPI/GapC3 TPI/GapC3 Phatr45509 Phatr45509 Phatr12501 Phatr12501 Phatr12188 Phatr12188 Phatr25840 Phatr25840 Phatr23552 Phatr23552 Phatr4074 Phatr4074
"Phatr12501" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr12501Predicted protein (238 aa)    
Predicted Functional Partners:
Phatr25840
Predicted protein (1128 aa)
       
  0.947
Phatr23552
Predicted protein (1060 aa)
       
  0.947
Phatr45509
Predicted protein (723 aa)
   
 
  0.943
Phatr4074
Predicted protein (273 aa)
         
  0.880
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase (614 aa)
         
  0.695
Phatr15032
GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner (157 aa)
         
  0.521
Phatr12188
GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner (100 aa)
         
  0.521
GAPN
Glyceraldehyde-3-phosphate dehydrogenase (588 aa)
       
  0.452
ACL
Atp-citrate synthase (1082 aa)
         
  0.450
Phatr31906
Aldehyde dehydrogenase (551 aa)
       
  0.443
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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