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Phatr44382 Phatr44382 Phatr45773 Phatr45773 secA secA Phatr13581 Phatr13581 Phatr10593 Phatr10593 Phatr49293 Phatr49293 Phatr52174 Phatr52174 Phatr12605 Phatr12605 clpP clpP Phatr40933 Phatr40933 Phatr44232 Phatr44232
"Phatr12605" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr12605Predicted protein (615 aa)    
Predicted Functional Partners:
Phatr45773
ATP-dependent Clp protease proteolytic subunit (309 aa)
       
 
  0.608
Phatr44382
ATP-dependent Clp protease proteolytic subunit (260 aa)
       
 
  0.608
Phatr44232
ATP-dependent Clp protease proteolytic subunit (223 aa)
       
 
  0.608
Phatr40933
ATP-dependent Clp protease proteolytic subunit (188 aa)
       
 
  0.608
clpP
ATP-dependent Clp protease proteolytic subunit (214 aa)
       
 
  0.608
Phatr10593
ATP-dependent Clp protease proteolytic subunit (199 aa)
       
 
  0.608
Phatr49293
Predicted protein (864 aa)
     
 
  0.548
secA
Protein translocase subunit secA (935 aa)
         
  0.533
Phatr52174
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1143 aa)
         
  0.481
Phatr13581
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1165 aa)
         
  0.481
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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