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Phatr20948 Phatr20948 Phatr15689 Phatr15689 Phatr20787 Phatr20787 atpB atpB Phatr26515 Phatr26515 SDH2 SDH2 Phatr13358 Phatr13358 AtpC AtpC Phatr10319 Phatr10319 Phatr18398 Phatr18398 Phatr17671 Phatr17671
"Phatr13358" - Cytochrome b6-f complex iron-sulfur subunit in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr13358Cytochrome b6-f complex iron-sulfur subunit (178 aa)    
Predicted Functional Partners:
Phatr26515
Predicted protein (272 aa)
   
  0.999
Phatr20787
Predicted protein (473 aa)
     
  0.994
Phatr20948
Predicted protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain (104 aa)
   
  0.973
AtpC
ATP synthase gamma chain, chloroplastic (369 aa)
     
   
  0.961
Phatr18398
ATP synthase gamma chain (305 aa)
     
   
  0.961
Phatr15689
Predicted protein (441 aa)
     
  0.944
SDH2
Succinate dehydrogenase iron sulfur protein; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q) (273 aa)
   
  0.921
Phatr10319
Predicted protein (1032 aa)
     
  0.917
atpB
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane (501 aa)
     
   
  0.894
Phatr17671
Predicted protein (397 aa)
     
  0.827
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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